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I have a set of ~18,500 SNPs that I have generated r2 values for, and was excited to try this package out. I'm having issues getting LDnaRaw() to work. I can run the toy example for the documentation with no trouble.
After having loaded my matrix in and dimnaming it, I pass it to LDnaRaw() thusly:
ldna LDnaRaw(c_r2, mc.cores=8)
I get this error:
error: evaluation nested too deeply: infinite recursion / options(expressions=)?
traceback() yields the following with repeated lines trimmed out:
1001: which(phy$edge[, 1] == des2del) 1000: foo(ancestor, phy$edge[k, 2]) 999: foo(ancestor, phy$edge[k, 2]) 998: foo(ancestor, phy$edge[k, 2]) 997: foo(ancestor, phy$edge[k, 2]) . 5: foo(ancestor, phy$edge[k, 2]) 4: foo(ancestor, phy$edge[k, 2]) 3: foo(anc[i], node2del[i]) 2: di2multi(tree) 1: LDnaRaw(c_r2, mc.cores = 8) The text was updated successfully, but these errors were encountered: